Selected references concerning PASS
															
															Some Publications of 
															PASS Team:
															
															Ivanov, S.M., 
															Lagunin, A.A., 
															Zakharov, A.V., 
															Filimonov, D.A., 
															Poroikov, V.V. 
															(2013) Computer 
															Search for Molecular 
															Mechanisms of 
															Ulcerogenic Action 
															of Non-Steroidal 
															Anti-Inflammatory 
															Drugs. 
															Biochemistry 
															(Moscow) Supplement 
															Series B: Biomedical 
															Chemistry 7:40–45.
															
															link.
															Korolev, S.P., Kondrashina, O.V., Druzhilovsky, D.S., Starosotnikov, A.M., Dutov, M.D., Bastrakov, M.A., Dalinger, I.L., Filimonov, D.A., Shevelev, S.A., Poroikov, V.V., Agapkina, Y.Y., Gottikh, M.B. (2013) Structural-Functional Analysis of 2,1,3-Benzoxadiazoles and Their N-oxides As HIV-1 Integrase Inhibitors. Acta Naturae 5:63–72. 23556131.
Lagunin, A.A., Gloriozova, T.A., Dmitriev, A.V., Volgina, N.E., Poroikov, V.V. (2013) Computer evaluation of drug interactions with P-glycoprotein. Bull. Exp. Biol. Med. 154:521–524. 23486596.
Zakharov, A.V., Peach, M.L., Sitzmann, M., Filippov, I.V., McCartney, H.J., Smith, L.H., Pugliese, A., Nicklaus, M.C. (2012) Computational tools and resources for metabolism-related property predictions. 2. Application to prediction of half-life time in human liver microsomes. Future Med. Chem. 4:1933–1944. 23088274.
															Filz O.A., Poroikov 
															V.V. (2012). Design 
															of chemical 
															compounds with 
															desired properties 
															using fragment 
															libraries. 
															Russian Chemical 
															Reviews, 81 
															(2), 158-174.
															
															Turpion
															
															Eleftheriou P., 
															Geronikaki A., 
															Hadjipavlou-Litina 
															D., Vicini P., Filz 
															O., Filimonov D., 
															Poroikov V., 
															Chaudhaery S.S., Roy 
															K.K., Saxena A. 
															(2011). 
															Fragment-based 
															design, docking, 
															synthesis, 
															biological 
															evaluation and 
															structure-activity 
															relationships of 
															2-benzo/benzisothiazolimino-5-aryliden-4-thiazolidinones 
															as 
															cycloxygenase/lipoxygenase 
															inhibitors. Eur. 
															J. Med. Chem., 
															2012,47 (1), 
															111-124.
															
															PubMed
															Goel R.K., Singh D., 
															Lagunin A., Poroikov 
															V. (2011). 
															PASS-assisted 
															exploration of new 
															therapeutic 
															potential of natural 
															products. Med. 
															Chem. Res., 20 
															(9), 1509-1514.
															
															Springerlink
															Kryzhanovsky S.A., 
															Salimov R.M., 
															Lagunin A.A., 
															Filimonov D.A., 
															Gloriozova T.A., 
															Poroikov V.V. 
															(2011). Nootropic 
															action of some 
															antihypertensive 
															drugs: computational 
															prediction and 
															experimental 
															testing. 
															Pharm.-Chem. J., 
															45 (10), 25-31.
															
															Springerlink
															Kokurkina G.V., 
															Dutov M.D., Shevelev 
															S.A., Popkov S.V., 
															Zakharov A.V., 
															Poroikov V.V. 
															(2011). Synthesis, 
															antifungal activity 
															and QSAR study of 
															2-arylhydroxynitroindoles.
															Eur. J. Med. 
															Chem., 46 (9), 
															4374-4382.
															
															PubMed
															Lagunin A., Zakharov 
															A., Filimonov D., 
															Poroikov V. (2011). 
															QSAR Modelling of 
															Rat Acute Toxicity 
															on the Basis of PASS 
															Prediction. 
															Molecular 
															Informatics, 30 
															(2-3), 241-250.
															
															Wiley
															Prasad Y.R., Raja 
															Sekhar K.K., 
															Shankarananth V., 
															Sireesha G., Swetha 
															Harika K., Poroikov 
															V. (2011). Synthesis 
															and in silico 
															biological activity 
															evaluation of some 
															1,3,5-Trisubstituted 
															-2-pyrazolines. 
															Journal of Pharmacy 
															Research, 4 
															(2), 558-560.
															
															Journal of Pharmacy 
															Research
															Lagunin A., 
															Filimonov D.A., 
															Poroikov V.V.В 
															(2010). 
															Multi-targeted 
															natural products 
															evaluation based on 
															biological activity 
															prediction with 
															PASS. Cur.В 
															Phar. Des., 16 
															(15), 1703-1717.
															
															PubMed
Poroikov V.V., Filimonov D.A., Gloriozova T.A., Lagunin A.A., Druzhilovsky D.S., Stepanchikova A.V.В (2009). Computer-aided prediction of biological activity spectra for substances: virtual chemogenomics. The Herald of Vavilov Society for Genecitists and Breeding Scientists, 13 (1) 137-143 (Rus).
Lagunin A., Filimonov D., Zakharov A., Xie W., Huang Y., Zhu F., Shen T., Yao J., Poroikov V.В (2009). Computer-Aided Prediction of Rodent Carcinogenicity by PASS and CISOC-PSCT. QSAR and Combinatorial Science, 28 (8) 806-810.
															Geronikaki A., 
															Vicini P., Dabarakis 
															N., Lagunin A., 
															Poroikov V., Dearden 
															J., Modarresi H., 
															Hewitt M., 
															Theophilidis 
															G.(2009). Evaluation 
															of the local 
															anaesthetic activity 
															of 
															3-aminobenzo[d]isothiazole 
															derivatives using 
															the rat sciatic 
															nerve model. 
															Eur. J. Med. Chem., 
															44 (2), 473-481.
															
															PubMed
Filimonov D.A., Poroikov V.V.В (2008). Probabilistic approach in activity prediction. In: Chemoinformatics Approaches to Virtual Screening. Eds. Alexandre Varnek and Alexander Tropsha. Cambridge (UK): RSC Publishing, p.182-216.
															Geronikaki A., 
															Druzhilovsky D., 
															Zakharov A., 
															Poroikov V.В (2008). 
															Computer-aided 
															predictions for 
															medicinal chemistry 
															via Internet. 
															SAR and QSAR in 
															Environ. Res., 
															19(1 & 2), 27-38.
															
															PubMed
															Filz O., Lagunin A., 
															Filimonov D., 
															Poroikov V.В (2008). 
															Computer-aided 
															prediction of 
															QT-prolongation. 
															SAR and QSAR in 
															Environ. Res., 
															19 (1 & 2), 81-90.
															
															PubMed
															Geronikaki A.A., 
															Lagunin A.A., 
															Hadjipavlou-Litina 
															D.I., Elefteriou 
															P.T., Filimonov 
															D.A., Poroikov V.V., 
															Alam I., Saxena 
															A.K.В (2008). 
															Computer-aided 
															discovery of 
															anti-inflammatory 
															thiazolidinones with 
															dual 
															cyclooxygenase/lipoxygenase 
															inhibition. J. 
															Med. Chem., 51 
															(6), 1601-1609.
															
															PubMed
															Poroikov V., 
															Filimonov D., 
															Lagunin A., 
															Gloriozova T., 
															Zakharov A.В (2007). 
															PASS: Identification 
															of probable targets 
															and mechanisms of 
															toxicity.В SAR & 
															QSAR in 
															Environmental 
															Research, 18 
															(1-2), 101-110.
															
															PubMed
Filimonov D.A., Poroikov V.V.В (2006). Prediction of biological activity spectra for organic compounds. Russian Chemical Journal, 50 (2), 66-75.
Poroikov V.V., Filimonov D.A., Gloriozova T.A., Lagunin A.A.В (2006). Computer prediction of biological activity spectra for nitrogen-containing organic compounds. In: Nitrogen-Containing Heterocycles, M.: ICSPF, p.109-120.
															Lagunin A.A., 
															Dearden J., 
															Filimonov D.A., 
															Poroikov V.V.В 
															(2005). 
															Computer-aided 
															rodent 
															carcinogenicity 
															prediction. 
															Mutation Research, 
															586В (2), 138-146.
															
															PubMed
Poroikov V., Filimonov D.В (2005). PASS: Prediction of Biological Activity Spectra for Substances. In: Predictive Toxicology. Ed. by Christoph Helma. Taylor & Francis, 459-478.
															Dembitsky V.M., 
															Gloriozova T.A., 
															Poroikov V.V.В 
															(2005). Novel 
															antitumor agents: 
															marine sponge 
															alkaloids, their 
															synthetic analogues 
															and derivatives. 
															Mini-Reviews in 
															Medicinal Chemistry, 
															5 (3), 319-336.
															
															PubMed
															Geronikaki A., 
															Dearden J., 
															Filimonov D., 
															Galaeva I., Garibova 
															T., Gloriozova T., 
															Krajneva V., Lagunin 
															A., Macaev F., 
															Molodavkin G., 
															Poroikov V., 
															Pogrebnoi S., 
															Shepeli F., Voronina 
															T., Tsitlakidou M., 
															Vlad L.В (2004). 
															Design of new 
															cognition enhancers: 
															from computer 
															prediction to 
															synthesis and 
															biological 
															evaluation. J. 
															Med. Chem., 
															47(11), 2870-2876.
															
															PubMed
															Geronikaki A., 
															Babaev E., Dearden 
															J., Dehaen W., 
															Filimonov D., 
															Galaeva I., Krajneva 
															V., Lagunin A., 
															Macaev F., 
															Molodavkin G., 
															Poroikov V., 
															Saloutin V., 
															Stepanchikova A., 
															Voronina T.В (2004). 
															Design of new 
															anxiolytics: from 
															computer prediction 
															to synthesis and 
															biological 
															evaluation. 
															Bioorg. Med. Chem., 
															12 (24), 6559-6568.
															
															PubMed
															Poroikov V.V., 
															Filimonov D.A., 
															Ihlenfeldt W.-D., 
															Gloriozova T.A., 
															Lagunin A.A., 
															Borodina Yu.V., 
															Stepanchikova A.V., 
															Nicklaus M.C.В 
															(2003). PASS 
															Biological Activity 
															Spectrum Predictions 
															in the Enhanced Open 
															NCI Database 
															Browser. J. 
															Chem. Inform. 
															Comput. Sci., 
															43 (1) 228-236.
															
															PubMed
															Stepanchikova A.V., 
															Lagunin A.A., 
															Filimonov D.A., 
															Poroikov V.V.В 
															(2003). Prediction 
															of biological 
															activity spectra for 
															substances: 
															Evaluation on the 
															diverse set of 
															drug-like 
															structures. 
															Current Med. Chem., 
															10 (3), 225-233.
															
															PubMed
															Lagunin A.A., 
															Gomazkov O.A., 
															Filimonov D.A., 
															Gureeva T.A., 
															Dilakyan E.A., 
															Kugaevskaya E.V., 
															Elisseeva Yu.E., 
															Solovyeva N.I., 
															Poroikov V.V.В 
															(2003). 
															Computer-aided 
															selection of 
															potential 
															antihypertensive 
															compounds with dual 
															mechanisms of 
															action. J. Med. 
															Chem., 46 (15), 
															3326-3332.
															
															PubMed
															Borodina Yu., Sadym 
															A., Filimonov D., 
															Blinova V., Dmitriev 
															A., Poroikov V.В 
															(2003). Predicting 
															biotransformation 
															potential from 
															molecular structure.
															J. Chem. Inform. 
															Comput. Sci., 
															43 (5), 1636-1646.
															
															PubMed
															Sadym A., Lagunin 
															A., Filimonov D., 
															Poroikov V.В (2003). 
															Prediction of 
															biological activity 
															spectra via 
															Internet. SAR 
															and QSAR in 
															Environmental 
															Research, 14 
															(5-6), 339-347.
															
															PubMed
															Geronikaki A., 
															Lagunin A., Poroikov 
															V., Filimonov D., 
															Hadjipavlou-Litina 
															D., Vicini P.В 
															(2002). Computer 
															aided prediction of 
															biological activity 
															spectra: evaluating 
															versus known and 
															predicting of new 
															activities for 
															thiazole derivative.
															SAR and QSAR in 
															Environmental 
															Research, 13 
															(3/4), 457-471.
															
															PubMed
															Poroikov V.V., 
															Filimonov D.A.В 
															(2002). How to 
															acquire new 
															biological 
															activities in old 
															compounds by 
															computer prediction.
															J. Comput. Aid. 
															Molec. Des., 
															16В (11),819-824.
															
															PubMed
															Anzali S., Barnickel 
															G., Cezanne B., Krug 
															M., Filimonov D., 
															Poroikov V.В (2001). 
															Discriminating 
															between drugs and 
															nondrugs by 
															Prediction of 
															Activity Spectra for 
															Substances (PASS).
															J. Med. Chem., 
															44 (15), 2432-2437.
															
															PubMed
															Poroikov V., Akimov 
															D., Shabelnikova E., 
															Filimonov D.В 
															(2001). Top 200 
															medicines: can new 
															actions be 
															discovered through 
															computer-aided 
															prediction? SAR 
															and QSAR in 
															Environmental 
															Research, 12 
															(4), 327-344.
															
															PubMed
Poroikov V., Filimonov D.В (2001). Computer-aided prediction of biological activity spectra. Application for finding and optimization of new leads. Rational Approaches to Drug Design, Eds. H.-D. Holtje, W.Sippl, Prous Science, Barcelona, p.403-407.
															Lagunin A., 
															Stepanchikova A., 
															Filimonov D., 
															Poroikov V.В (2000). 
															PASS: prediction of 
															activity spectra for 
															biologically active 
															substances. 
															Bioinformatics, 16 
															(8), 747-748.
															
															PubMed
															Poroikov V.V., 
															Filimonov D.A., 
															Borodina Yu. V., 
															Lagunin A.A., Kos 
															A.В (2000). 
															Robustness of 
															biological activity 
															spectra predicting 
															by computer program 
															PASS for 
															non-congeneric sets 
															of chemical 
															compounds. J. 
															Chem. Inform. 
															Comput. Sci., 
															40 (6), 1349-1355.
															
															PubMed
															Martynova N.B., 
															Filimonov D.A., 
															Poroikov V.V.В 
															(2000). Computer 
															prediction of 
															biological activity 
															spectrum for low 
															molecular weight 
															peptides and 
															peptidmimetics. 
															Russian Journal of 
															Bioorganic 
															Chemistry, 26 
															(5), 297-305.
															
															SpringerLink
Geronikaki A., Poroikov V., Hadjipavlou-Litina D., Filimonov D., Lagunin A., Mgonzo R.В (1999). Computer aided predicting the biological activity spectra and experimental testing of new thiazole derivatives. Quant. Struct.-Activ. Relationships, 18 (1), 16-25.
															Filimonov D., 
															Poroikov V., 
															Borodina Yu., 
															Gloriozova T.В 
															(1999). Chemical 
															Similarity 
															Assessment through 
															multilevel 
															neighborhoods of 
															atoms: definition 
															and comparison with 
															the other 
															descriptors. J. 
															Chem. Inf. Comput. 
															Sci. 
															39:666-670.
															
															ACS Journals
															Gloriozova T.A., 
															Filimonov D.A., 
															Lagunin A.A., 
															Poroikov V.V.В 
															(1998) Evaluation of 
															computer system for 
															prediction of 
															biological activity 
															PASS on the set of 
															new chemical 
															compounds. 
															Pharmaceutical 
															Chemistry Journal, 
															32 (12), 658-664.
															
															SpringerLink
															Trapkov V.A., 
															Budunova A.P., 
															Burova O.A., 
															Filimonov D.A., 
															Poroikov V.V 
															Discovery of new 
															antiulcer agents by 
															computer aided 
															prediction of 
															biological 
															activity.(1997) 
															Problems in Medical 
															Chemistry (Moscow), 
															43 (1), 41-57.
															
															PubMed
Filimonov D.A., Poroikov V.V.В (1996). PASS: computerized prediction of biological activity spectra for chemical substances. In: Bioactive Compound Design: Possibilities for Industrial Use, BIOS Scientific Publishers, Oxford (UK), p.47-56.
															Borodina Yu.V., 
															Filimonov D.A., 
															Poroikov V.V.(1996). 
															Computer-aided 
															prediction of 
															prodrug activity 
															using the PASS 
															system. 
															Pharmaceutical 
															Chemistry Journal, 
															30 (12), 760-763.
															
															SpringerLink
															Filimonov D.A., 
															Poroikov V.V., 
															Karaicheva E.I. 
															Kazarian R.K., 
															Budunova A.P., 
															Mikhailovskii E.M., 
															Rudnitskikh A.V., 
															Goncharenko L.V., 
															Burov Yu.V.В (1995) 
															Computer-Aided 
															Prediction of 
															Biological Activity 
															Spectra of Chemical 
															Substances on the 
															Basis of Their 
															Structural Formulae: 
															Computerized System 
															PASS. Experimental 
															and Clinical 
															Pharmacology (Rus), 
															58 (2), 56-62.
															
															PubMed
Poroikov V.V., Filimonov D.A., Boudunova A.P.В (1993) Comparison of the Results of Prediction of the Spectra of Biological Activity of Chemical Compounds by Experts and the PASS System. Automatic Documentation and Mathematical Linguistics. Allerton Press, Inc., 27 (3), 40-43.
Burov Yu.V., Poroikov V.V., Korolchenko L.V.В (1990) National system for registration and biological testing of chemical compounds: facilities for new drugs search. Bull. Natl. Center for Biologically Active Compounds (Rus.), Issue 1, 4-25.
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